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1.
Int J Mol Sci ; 25(7)2024 Mar 29.
Artigo em Inglês | MEDLINE | ID: mdl-38612626

RESUMO

The family of phosphatidylethanolamine-binding proteins (PEBPs) participates in various plant biological processes, mainly flowering regulation and seed germination. In cucurbit crops, several PEBP genes have been recognized to be responsible for flowering time. However, the investigation of PEBP family members across the genomes of cucurbit species has not been reported, and their conservation and divergence in structure and function remain largely unclear. Herein, PEBP genes were identified from seven cucurbit crops and were used to perform a comparative genomics analysis. The cucurbit PEBP proteins could be classified into MFT, FT, TFL, and PEBP clades, and further, the TFL clade was divided into BFT-like, CEN-like, and TFL1-like subclades. The MFT-like, FT-like, and TFL-like proteins were clearly distinguished by a critical amino acid residue at the 85th position of the Arabidopsis FT protein. In gene expression analysis, CsaPEBP1 was highly expressed in flowers, and its expression levels in females and males were 70.5 and 89.2 times higher, respectively, than those in leaves. CsaPEBP5, CsaPEBP6, and CsaPEBP7 were specifically expressed in male flowers, with expression levels 58.1, 17.3, and 15.7 times higher, respectively, than those of leaves. At least five CsaPEBP genes exhibited the highest expression during the later stages of corolla opening. Through clustering of time-series-based RNA-seq data, several potential transcription factors (TFs) interacting with four CsaPEBPs were identified during cucumber corolla opening. Because of the tandem repeats of binding sites in promoters, NF-YB (Csa4G037610) and GATA (Csa7G64580) TFs appeared to be better able to regulate the CsaPEBP2 and CsaPEBP5 genes, respectively. This study would provide helpful information for further investigating the roles of PEBP genes and their interacting TFs in growth and development processes, such as flowering time regulation in cucurbit crops.


Assuntos
Cucumis sativus , Gastrópodes , Feminino , Masculino , Animais , Cucumis sativus/genética , Reprodução , Hibridização Genômica Comparativa , Fatores de Tempo , Produtos Agrícolas , Genômica
3.
Chemosphere ; 355: 141863, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38579955

RESUMO

Bifenthrin (BF) is ubiquitous in aquatic environments, and studies have indicated that environmental concentrations of BF could cause neurotoxicity and oxidative damage in fish and decrease the abundance of aquatic insects. However, little information is available on the toxicity of BF in freshwater benthic mollusks. Bellamya aeruginosa (B. aeruginosa) is a key benthic fauna species in aquatic ecosystems, and has extremely high economic and ecological values. In this study, larval B. aeruginosa within 24 h of birth were exposed to 0, 30 or 300 ng/L of BF for 30 days, and then the toxic effects from molecular to individual levels were comprehensively evaluated in all the three treatment groups. It was found that BF at 300 ng/L caused the mortality of snails. Furthermore, BF affected snail behaviors, evidenced by reduced crawling distance and crawling speed. The hepatopancreas of snails in the two BF exposure groups showed significant pathological changes, including increase in the number of yellow granules and occurrence of hemocyte infiltration, epithelial cell thinning, and necrosis. The levels of ROS and MDA were significantly increased after exposure to 300 ng/L BF, and the activities of two antioxidant enzymes SOD and CAT were increased significantly. GSH content decreased significantly after BF exposure, indicating the occurrence of oxidative damage in snails. Transcriptomic results showed that differentially expressed genes (DEGs) were significantly enriched in pathways related to metabolism and neurotoxicity (e.g., oxidative phosphorylation and Parkinson disease), and these results were consistent with those in individual and biochemical levels above. The study indicates that environmental concentration of BF results in decreased survival rates, sluggish behavior, histopathological lesions, oxidative damage, and transcriptomic changes in the larvae of B. aeruginosa. Thus, exposure of larval snails to BF in the wild at concentrations similar to those used in this study might have adverse consequences at the population level. These findings provide a theoretical basis for further assessing the ecological risk of BF to aquatic gastropods.


Assuntos
Gastrópodes , Pseudomonas aeruginosa , Piretrinas , Animais , Ecossistema , Larva , Água Doce
4.
Emerg Infect Dis ; 30(13): S21-S27, 2024 04.
Artigo em Inglês | MEDLINE | ID: mdl-38561638

RESUMO

Institution-level wastewater-based surveillance was implemented during the COVID-19 pandemic, including in carceral facilities. We examined the relationship between COVID-19 diagnostic test results of residents in a jail in Atlanta, Georgia, USA (average population ≈2,700), and quantitative reverse transcription PCR signal for SARS-CoV-2 in weekly wastewater samples collected during October 2021‒May 2022. The jail offered residents rapid antigen testing at entry and periodic mass screenings by reverse transcription PCR of self-collected nasal swab specimens. We aggregated individual test data, calculated the Spearman correlation coefficient, and performed logistic regression to examine the relationship between strength of SARS-CoV-2 PCR signal (cycle threshold value) in wastewater and percentage of jail population that tested positive for COVID-19. Of 13,745 nasal specimens collected, 3.9% were COVID-positive (range 0%-29.5% per week). We observed a strong inverse correlation between diagnostic test positivity and cycle threshold value (r = -0.67; p<0.01). Wastewater-based surveillance represents an effective strategy for jailwide surveillance of COVID-19.


Assuntos
COVID-19 , Gastrópodes , Humanos , Animais , SARS-CoV-2/genética , COVID-19/diagnóstico , COVID-19/epidemiologia , Georgia/epidemiologia , Águas Residuárias , Prisões Locais , Pandemias , RNA Viral
5.
BMC Ecol Evol ; 24(1): 42, 2024 Apr 08.
Artigo em Inglês | MEDLINE | ID: mdl-38589809

RESUMO

BACKGROUND: Species flocks in ancient lakes, and particularly those arising from adaptive radiation, make up the bulk of overall taxonomic and morphological diversity in these insular ecosystems. For these mostly young species assemblages, classical mitochondrial barcoding markers have so far been key to disentangle interspecific relationships. However, with the rise and further development of next-generation sequencing (NGS) methods and mapping tools, genome-wide data have become an increasingly important source of information even for non-model groups. RESULTS: Here, we provide, for the first time, a comprehensive mitogenome dataset of freshwater gastropods endemic to Sulawesi and thus of an ancient lake invertebrate species flock in general. We applied low-coverage whole-genome sequencing for a total of 78 individuals including 27 out of the 28 Tylomelania morphospecies from the Malili lake system as well as selected representatives from Lake Poso and adjacent catchments. Our aim was to assess whether mitogenomes considerably contribute to the phylogenetic resolution within this young species flock. Interestingly, we identified a high number of variable and parsimony-informative sites across the other 'non-traditional' mitochondrial loci. However, although the overall support was very high, the topology obtained was largely congruent with previously published single-locus phylogenies. Several clades remained unresolved and a large number of species was recovered polyphyletic, indicative of both rapid diversification and mitochondrial introgression. CONCLUSIONS: This once again illustrates that, despite the higher number of characters available, mitogenomes behave like a single locus and thus can only make a limited contribution to resolving species boundaries, particularly when introgression events are involved.


Assuntos
Gastrópodes , Genoma Mitocondrial , Humanos , Animais , Filogenia , Genoma Mitocondrial/genética , Gastrópodes/genética , Ecossistema , Lagos
6.
Mar Environ Res ; 197: 106486, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38588615

RESUMO

Foams are a ubiquitous feature of marine environments. They can have major economic, societal and ecological consequences through their accumulation on the shore. Despite their pervasive nature and evidence that stable foam deposits play a pivotal role in the ecology of soft shore and estuaries, very limited amounts of information are available on their contribution to the structure and function at play in rocky intertidal ecosystems. This study shows that the metabolic rate of the high-shore gastropod Littorina saxatilis is significantly higher in individuals exposed to foams. Behavioural assays conducted under laboratory-controlled conditions further show that this species detects foam-born infochemicals both indirectly or directly, hence rely on both airborne and contact chemosensory cues. L. saxatilis also actively avoid areas covered in foam, and increase their activity in the presence of foam. These observations are interpreted in terms of foam-induced increased metabolic stress and increases behavioural anxiety and vigilance. They are further discussed in relation to the occurrence of two phytoplankton species known to produce repellent and/or toxic compounds such as domoic acid and dimethylsulfoniopropionate, the diatom Pseudo-nitzschia multistriata and the haptophyte Phaeocystis globosa, with the latter occurring at unusually high density. Taken together, these results suggest that the accumulation of foams on intertidal rocky shores may have major implications on taxa relying on both airborne and contact chemosensory cues to navigate, find food and mating partners. Specifically, the observed increased behavioural activity coupled with increased metabolic demands may impact species fitness and highlight potentially large ecological consequences in rocky intertidal ecosystems characterized by strong hydrodynamism and elevated organic matter content leading to the presence of long-lived foam.


Assuntos
Ecossistema , Gastrópodes , Humanos , Animais
7.
Molecules ; 29(7)2024 Mar 30.
Artigo em Inglês | MEDLINE | ID: mdl-38611838

RESUMO

The rhizome of Polygonatum cyrtonema Hua has been used as a traditional Chinese medicine for over 2000 years. The fresh Chinese herb possesses micro toxicity and is thus traditionally alternately steamed and basked nine times to alleviate the toxicity and enhance the pharmaceutical efficacy. Different processing cycles usually result in variable therapeutic effects in the processed Polygonatum cyrtonema Hua (P-PCH). However, it can be hard to tell these various P-PCHs apart at present. To identify the P-PCHs that had undergone repeated steaming one to nine times, the chemical constituents were profiled based on Ultra-Performance Liquid Chromatography with Quadruple-Time-of-Flight Mass Spectrometry, and the Principal Component Analysis and Cluster Analysis methods were adopted to discriminate different cycles of P-PCH. A total of 44 characteristic markers were identified, which allowed the P-PCHs to be discriminated exactly.


Assuntos
Gastrópodes , Polygonatum , Animais , Análise por Conglomerados , Espectrometria de Massas , Vapor , Cromatografia Líquida
8.
Artigo em Chinês | MEDLINE | ID: mdl-38604684

RESUMO

OBJECTIVE: To investigate the population distribution of intermediate host snails and crabs of Paragonimus along the Jiulongjiang River, Zhangjiang River, and Dongxi River basins in Bopingling Mountain, southern Fujian Province, so as to provide baseline data for researches on parasitic disease prevention and control and enlargement of samples in the parasitic resource bank. METHODS: A total of 23 villages in 8 counties (districts) along the Jiulong River, Zhangjiang River, and Dongxi River basins in Zhangzhou City, Fujian Province were selected as survey sites during the period from November 2020 through March 2023, and snail and freshwater crabs were sampled from 1 to 3 streams and ditches neighboring residential areas in each village. Morphological identification of snails was performed according to the external morphological characteristics of collected snail shells, and the unidentified snail species sampled from the natural foci of paragonimiasis in Yunxiao County were subjected to se-quence analysis of the mitochondrial cytochrome oxidase 1 (CO1) gene. The crab species was identified by observing the morphological characteristics of the terminal segment of the first pleopod of male crabs, and Paragonimus cercariae and metacercariae were detected in collected snails. RESULTS: The shells of the unidentified snails sampled from the natural foci of paragonimiasis in Yunxiao County were approximately 50 mm in height and 18 mm in width, thick and solid, long tower cone-shaped, and had 8 to 10 whorls. CO1 gene sequence analysis identified the snail species as Sulcospira hainanensis. A total of 6 freshwater snail species belonging to 5 genera within 3 families, identified 23 survey sites, including Semisulcospira libertina, Paludomus zhangchouensis and S. hainanensis that belonged to the Family Pleurceridae, Tricula fujianensis and T. huaanensis that belonged to the subfamily Triculinae, Family Pomatiopsidae, and Melanoides tuberculata (Family Thiaridae), and 11 species of freshwater crabs belonging to 5 genera within 2 families were identified, including Sinopotamon genus of S. jianglense, S. pinheense, and S. zhangzhouense, Huananpotamon genus of H. planopodum and H. zhangzhouense, Nanhaipotamon genus of N. huaanense and N. longhaiense, and Minpotamon genus of M. nasicum and M. auritum that belonged to the Family Potamidae, and Somanniathelphusa genus of S. huaanensis and S. zhangpuensis (Family Parathelphusidae). In addition, the prevalence of P. westermani cercariae infections was 0.08% (2/2 317) in P. zhangchouensis from Danyan Village in Changtai District and 0.09% (1/1 039) in S. hainanensis from Jinkeng Village in Yunxiao County, and the prevalence of P. westermani metacercariae infections was 25.81% (8/31) in S. jianglense from Danyan Village in Changtai District, and 26.31% (5/19) in S. zhangzhouense from Jinkeng Village in Yunxiao County, respectively. CONCLUSIONS: There is a population diversity in the intermediate host snails and crabs along the Jiulongjiang River, Zhangjiang River, and Dongxi River basins in Bopingling Mountain, southern Fujian Province, and P. zhangzhouensis and S. hainanensis are, for the first time, confirmed as the first intermediate hosts of P. westermani.


Assuntos
Braquiúros , Gastrópodes , Paragonimíase , Paragonimus , Humanos , Animais , Masculino , Paragonimus/genética , Braquiúros/parasitologia , Paragonimíase/epidemiologia , Rios , Água Doce
9.
PLoS One ; 19(4): e0301604, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38635649

RESUMO

The red abalone (Haliotis rufescens) represents North America's most important aquaculture species. Its hepatopancreas is rich in cellulases and other polysaccharide-degrading enzymes, which provide it the remarkable ability to digest cellulose-rich macroalgae; nevertheless, its cellulolytic systems are poorly explored. This manuscript describes some functional and structural properties of an endogenous trimeric glycosylated endoglucanase from H. rufescens. The purified enzyme showed a molecular mass of 23.4 kDa determined by MALDI-TOF mass spectrometry, which behaved as a homotrimer in gel filtration chromatography and zymograms. According to the periodic acid-Schiff reagent staining, detecting sugar moieties in SDS-PAGE gel confirmed that abalone cellulase is a glycoprotein. Hydrolysis of cello-oligosaccharides and p-nitrophenyl-ß-D-glucopyranosides confirmed its endo/exoactivity. A maximum enzyme activity toward 0.5% (w/v) carboxymethylcellulose of 53.9 ± 1.0 U/mg was achieved at 45°C and pH 6.0. We elucidated the abalone cellulase primary structure using proteases and mass spectrometry methods. Based on these results and using a bioinformatic approach, we identified the gene encoding this enzyme and deduced its full-length amino acid sequence; the mature protein comprised 177 residues with a calculated molecular mass of 19.1 kDa and, according to sequence similarity, it was classified into the glycosyl-hydrolase family 45 subfamily B. An AlphaFold theoretical model and docking simulations with cellopentaose confirmed that abalone cellulase is a ß-sheet rich protein, as also observed by circular dichroism experiments, with conserved catalytic residues: Asp26, Asn109, and Asp134. Interestingly, the AlphaFold-Multimer analysis indicated a trimeric assembly for abalone cellulase, which supported our experimental findings. The discovery and characterization of these enzymes may contribute to developing efficient cellulose bioconversion processes for biofuels and sustainable bioproducts.


Assuntos
Celulase , Gastrópodes , Animais , Celulase/metabolismo , Gastrópodes/genética , Sequência de Aminoácidos , Celulose/metabolismo , Polissacarídeos
10.
PLoS One ; 19(4): e0298668, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38625919

RESUMO

Limax maximus, or great gray slug, is a common agriculture pest. The pest infests crops during their growth phase, creating holes in vegetable leaves, particularly in seedlings and tender leaves. A study was conducted to assess the insecticidal activity of Ageratina adenophora extract against these slugs. Factors such as fecundity, growth, hatching rate, offspring survival rate, protective enzyme activity, and detoxifying enzyme activity were examined in slugs exposed to the extract's sublethal concentration (LC50) for two different durations (24 and 48 h). The phytochemical variability of the extracts was also studied. The LC50 value of the A. adenophora extract against L. maximus was 35.9 mg/mL. This extract significantly reduced the hatching rate of eggs and the survival rate of offspring hatched from exposed eggs compared with the control. The lowest rates were observed in those exposed for 48 h. The survival, growth, protective enzyme, and detoxification activity of newly hatched and 40-day-old slugs decreased. The A. adenophora extract contained tannins, flavonoids, and saponins, possibly contributing to their biological effects. These results suggest that the extract could be used as an alternative treatment for slug extermination, effectively controlling this species.


Assuntos
Ageratina , Asteraceae , Gastrópodes , Inseticidas , Animais , Inseticidas/farmacologia , Moluscos , Extratos Vegetais/farmacologia
11.
Physiol Plant ; 176(2): e14273, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38566156

RESUMO

Sacoglossa sea slugs have garnered attention due to their ability to retain intracellular functional chloroplasts from algae, while degrading other algal cell components. While protective mechanisms that limit oxidative damage under excessive light are well documented in plants and algae, the photoprotective strategies employed by these photosynthetic sea slugs remain unresolved. Species within the genus Elysia are known to retain chloroplasts from various algal sources, but the extent to which the metabolic processes from the donor algae can be sustained by the sea slugs is unclear. By comparing responses to high-light conditions through kinetic analyses, molecular techniques, and biochemical assays, this study shows significant differences between two photosynthetic Elysia species with chloroplasts derived from the green alga Acetabularia acetabulum. Notably, Elysia timida displayed remarkable tolerance to high-light stress and sophisticated photoprotective mechanisms such as an active xanthophyll cycle, efficient D1 protein recycling, accumulation of heat-shock proteins and α-tocopherol. In contrast, Elysia crispata exhibited absence or limitations in these photoprotective strategies. Our findings emphasize the intricate relationship between the host animal and the stolen chloroplasts, highlighting different capacities to protect the photosynthetic organelle from oxidative damage.


Assuntos
Acetabularia , Gastrópodes , Animais , Plastídeos/metabolismo , Cloroplastos/metabolismo , Fotossíntese , Gastrópodes/metabolismo
12.
Parasit Vectors ; 17(1): 147, 2024 Mar 21.
Artigo em Inglês | MEDLINE | ID: mdl-38515113

RESUMO

BACKGROUND: The elimination of schistosomiasis remains a challenging task, with current measures primarily focused on the monitoring and control of Oncomelania hupensis (O. hupensis) snail, the sole intermediate host of Schistosome japonicum. Given the emerging, re-emerging, and persistent habitats of snails, understanding their genetic diversity might be essential for their successful monitoring and control. The aims of this study were to analyze the genetic diversity of Oncomelania hupensis robertsoni (O. h. robertsoni) using microsatellite DNA markers; and validate the applicability of previously identified microsatellite loci for O. hupensis in hilly regions. METHODS: A total of 17 populations of O. h. robertsoni from Yunnan Province in China were selected for analysis of genetic diversity using six microsatellite DNA polymorphic loci (P82, P84, T4-22, T5-11, T5-13, and T6-27). RESULTS: The number of alleles among populations ranged from 0 to 19, with an average of 5. The average ranges of expected (He) and observed (Ho) heterozygosity within populations were 0.506 to 0.761 and 0.443 to 0.792, respectively. The average fixation index within the population ranged from - 0.801 to 0.211. The average polymorphic information content (PIC) within the population ranged from 0.411 to 0.757, appearing to be polymorphic for all loci (all PIC > 0.5), except for P28 and P48. A total of 68 loci showed significant deviations from Hardy-Weinberg equilibrium (P < 0.05), and pairwise Fst values ranged from 0.051 to 0.379. The analysis of molecular variance indicated that 88% of the variation occurred within snail populations, whereas 12% occurred among snail populations. Phylogenetic trees and principal coordinate analysis revealed two distinct clusters within the snail population, corresponding to "Yunnan North" and "Yunnan South". CONCLUSIONS: O. h. robertsoni exhibited a relatively high level of genetic differentiation, with variation chiefly existing within snail populations. All snail in this region could be separated into two clusters. The microsatellite loci P82 and P84 might not be suitable for classification studies of O. hupensis in hilly regions. These findings provided important information for the monitoring and control of snail, and for further genetic diversity studies on snail populations.


Assuntos
Gastrópodes , Schistosoma japonicum , Animais , Schistosoma japonicum/genética , Filogenia , China/epidemiologia , Repetições de Microssatélites , DNA , Variação Genética
13.
Genes (Basel) ; 15(3)2024 Feb 25.
Artigo em Inglês | MEDLINE | ID: mdl-38540349

RESUMO

For marine invertebrates, the disruption of organismal physiology and behavior by nanoplastics (NPs) has been extensively reported. Heat shock proteins (Hsps) are important for redundant protein breakdown, environmental changes, and intracellular protein transport. An exhaustive identification of Hsp70 genes and an experiment where different concentrations of NPs were stressed were performed to study how Hsp70 genes respond to NPs stress in Monodonta labio. Our results identified 15 members of Hsp70 within the genome of M. labio and provided insights into their responses to different concentrations of acute NP stress. Phylogenetic analyses revealed extensive amplification of the Hsp70 genes from the Hsc70 subfamily, with gene duplication events. As a result of NP stress, five of fifteen genes showed significant upregulation or downregulation. Three Hsp70 genes were highly expressed at an NP concentration of 0.1 mg/L, and no genes were downregulated. At 10 mg/L, they showed significant upregulation of two genes and significant downregulation of two genes. At 1 mg/L treatment, three genes were significantly downregulated, and no genes were significantly upregulated. Moreover, a purifying selection was revealed using a selection test conducted on duplicate gene pairs, indicating functional redundancy. This work is the first thorough examination of the Hsp70s in Archaeogastropoda. The findings improve knowledge of Hsp70s in molluscan adaptation to NP stress and intertidal living and offer essential data for the biological study of M. labio.


Assuntos
Gastrópodes , Microplásticos , Animais , Filogenia , Proteínas de Choque Térmico HSP70/genética , Proteínas de Choque Térmico HSP70/metabolismo , Proteínas de Choque Térmico/genética , Gastrópodes/genética , Gastrópodes/metabolismo , Perfilação da Expressão Gênica
14.
PLoS One ; 19(3): e0301389, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38547307

RESUMO

For the purpose of determining the placement of Calyptraeidae within the Littorinimorpha, we hereby furnish a thorough analysis of the mitochondrial genome (mitogenome) sequence of Desmaulus extinctorium. This mitogenome spans 16,605 base pairs and encompasses the entire set of 37 genes, including 13 PCGs, 22 tRNAs and two rRNAs, with an evident AT bias. Notably, tRNASer1 and tRNASer2 lack dihydrouracil (DHU) arms, resulting in an inability to form a secondary structure. Similarly, tRNAAla lacks a TΨC arm, rendering it incapable of forming a secondary structure. In contrast, the remaining tRNAs demonstrate a characteristic secondary structure reminiscent of a cloverleaf. A comparison with ancestral gastropods reveals distinct differences in three gene clusters (or genes), encompassing 15 tRNAs and eight PCGs. Notably, inversions and translocations represent the major types of rearrangements observed in D. extinctorium. Phylogenetic analysis demonstrates robust support for a monophyletic grouping of all Littorinimorpha species, with D. extinctorium representing a distinct Calyptraeoidea clade. In summary, this investigation provides the first complete mitochondrial dataset for a species of the Calyptraeidae, thus providing novel insights into the phylogenetic relationships within the Littorinimorpha.


Assuntos
Gastrópodes , Genoma Mitocondrial , Animais , Filogenia , Gastrópodes/genética , RNA de Transferência/genética , RNA Ribossômico/genética
15.
Genome Biol Evol ; 16(4)2024 Apr 02.
Artigo em Inglês | MEDLINE | ID: mdl-38546725

RESUMO

Patella caerulea (Linnaeus, 1758) is a mollusc limpet species of the class Gastropoda. Endemic to the Mediterranean Sea, it is considered a keystone species due to its primary role in structuring and regulating the ecological balance of tidal and subtidal habitats. It is currently being used as a bioindicator to assess the environmental quality of coastal marine waters and as a model species to understand adaptation to ocean acidification. Here, we provide a high-quality reference genome assembly and annotation for P. caerulea. We generated ∼30 Gb of Pacific Biosciences high-fidelity data from a single individual and provide a final 749.8 Mb assembly containing 62 contigs, including the mitochondrial genome (14,938 bp). With an N50 of 48.8 Mb and 98% of the assembly contained in the 18 largest contigs, this assembly is near chromosome-scale. Benchmarking Universal Single-Copy Orthologs scores were high (Mollusca, 87.8% complete; Metazoa, 97.2% complete) and similar to metrics observed for other chromosome-level Patella genomes, highlighting a possible bias in the Mollusca database for Patellids. We generated transcriptomic Illumina data from a second individual collected at the same locality and used it together with protein evidence to annotate the genome. A total of 23,938 protein-coding gene models were found. By comparing this annotation with other published Patella annotations, we found that the distribution and median values of exon and gene lengths was comparable with other Patella species despite different annotation approaches. The present high-quality P. caerulea reference genome, available on GenBank (BioProject: PRJNA1045377; assembly: GCA_036850965.1), is an important resource for future ecological and evolutionary studies.


Assuntos
Gastrópodes , Patela , Animais , Concentração de Íons de Hidrogênio , Anotação de Sequência Molecular , Água do Mar , Moluscos/genética , Cromossomos , Gastrópodes/genética
16.
Zootaxa ; 5401(1): 1-190, 2024 Jan 17.
Artigo em Inglês | MEDLINE | ID: mdl-38480114

RESUMO

Eurytomidae (Chalcidoidea) species associated with fig trees (Ficus) are still poorly documented. A phylogenetic analysis of 63 morphological characters was conducted to revise Afrotropical species of Sycophila Walker and Ficomila Bouek associated with fig trees. Based on our results, which also included Palaearctic species of Sycophila, three subgenera of Sycophila are proposed: Sycophila s. str., Tineomyza Rondani stat. rev. and a new subgenus, Ficorytoma subgen. n. Lotfalizadeh & Rasplus. Ficomila is maintained as a valid genus. Thirty-six species are also newly described by Lotfalizadeh & Rasplus, namely Ficomila artocarpoides sp. n., F. carolae sp. n., F. bouceki sp. n., F. comptoni sp. n., F. flava sp. n., F. gabonensis sp. n., F. gibba sp. n., F. guinensis sp. n., F. sinai sp. n., F. tanzanica sp. n., F. vannoorti sp. n., Sycophila (Tineomyza) beninensis sp. n., S. (T.) busseicola sp. n., S. (T.) glumosae sp. n., S. (T.) luteacola sp. n., S. (T.) maldesi sp. n., S. (T.) minuta sp. n., S. (T.) platygastra sp. n., S. (T.) risbeci sp. n., S. (T.) wiebesi sp. n., S. (T.) zebrogastra sp. n., S. (Ficorytoma) delvarei sp. n., S. (F.) persicae sp. n., S. (Sycophila) annae sp. n., S. (S.) bidentata sp. n., S. (S.) longiflagellata sp. n., S. (S.) chirindensis sp. n., S. (S.) ficophila sp. n., S. (S.) fusca sp. n., S. (S.) lasallei sp. n., S. (S.) macrospermae sp. n., S. (S.) meridionalis sp. n., S. (S.) nigra sp. n., S. (S.) nigriterga sp. n., S. (S.) suricola sp. n., S. (S.) zebra sp. n.. Seven described species of Sycophila are reclassified in the subgenus Tineomyza: Sycophila (Tineomyza) flaviclava Bouek, 1981; S. (T.) modesta Bouek, 1981; S. (T.) naso Bouek, 1981; S. (T.) punctum Bouek, 1981; S. (T.) ruandensis Risbec, 1957; S. (T.) sessilis Bouek, 1981 and S. (T.) setulosa Zerova, 2009. After this revision, Ficomila and Sycophila include 46 species associated with Afrotropical Ficus. Detailed morphological descriptions and illustrations as well as identification keys are provided for the subgenera, species-groups and species of Ficomila and Sycophila associated with Afrotropical fig trees; their host fig association and relative lack of host-specificity are also discussed.


Assuntos
Ficus , Gastrópodes , Himenópteros , Caramujos , Animais , Filogenia
17.
Zootaxa ; 5406(4): 551-564, 2024 Feb 08.
Artigo em Inglês | MEDLINE | ID: mdl-38480129

RESUMO

We describe two new species and a new record of stygobitic gastropods from small groundwater-fed springs in Candela, Coahuila, northern Mexico. Phreatomascogos garciasaucedoi n. sp. is described based on shell morphology and is the second species of this formerly monotypic genus. According to the current classification, we have transferred this genus to Cochliopidea. Phreatodrobia candelensis n. sp. is described, and represents the first record of the genus in Mexico extending its known range more than one hundred kilometers to the south. Also found with the new stygosnails was Coahuilix hubbsi Taylor, 1966, which was previously known only as an endemic species from the neighboring Cuatro Cinegas valley. The reported new subterranean snails are restricted in their distributions to two small water sources only a few meters long which flow directly into a touristic zone with swimming pools and other recreation areas. Using NatureServe Ranking, both new species were assigned as critically imperiled. The very limited distribution and negative anthropogenic impacts within the sites should draw special conservation attention for the reported stygobionts.


Assuntos
Gastrópodes , Animais , México , Caramujos , Água Doce
19.
Zootaxa ; 5405(4): 526-544, 2024 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-38480172

RESUMO

The neogastropod family Vasidae comprises a small group of Late Eocene to Recent neogastropods with large, often ornate shells. A new, shell-based morphological classification of the family is proposed, in which ten genera are recognized: Altivasum Hedley, 1914, Aristovasum gen. nov. (type species: Turbinella cassiforme Kiener, 1840), Florivasum gen. nov. (type species: Turbinella tubifera Anton, 1838), Globivasum Abbott, 1950 (type species: Turbinella nuttingi Henderson, 1919, but expanded here), Hystrivasum Olsson & Petit, 1964 (type species: Vasum horridum Heilprin, 1887), Rhinovasum gen. nov. (type species: Voluta rhinoceros Gmelin, 1791), Siphovasum Rehder & Abbott, 1951, Tudivasum Rosenberg & Petit, 1987, Vasum Rding, 1798 (here restricted to a reef-associated group of three species typified by Murex turbinellus Linnaeus, 1758), and Volutella Perry, 1810 (here resurrected from synonymy with Vasum, type species Voluta muricata Born, 1778). Biogeographically the Vasidae exhibit a deep divergence between the Atlantic-East Pacific and Indo-West Pacific realms dating to the Early Miocene.


Assuntos
Gastrópodes , Moluscos , Animais , Filogenia
20.
Zootaxa ; 5415(4): 585-592, 2024 Feb 23.
Artigo em Inglês | MEDLINE | ID: mdl-38480179

RESUMO

The members of the genus Pseudorientalia Radoman, 1983 are small hydrobiid species with characteristic features of the penis and female genitalia. The type locality of the genus is the southern Marmara region, northwestern Trkiye. In this study, sampling was carried out in the upper Sakarya River Basin, western-middle Anatolia to obtain hydrobiid specimens, which yielded a new Pseudorientalia. The shell, penis, and female genitalia of the new species are described. The measurement of some shell characters is compared with the other representatives of the genus from Trkiye, northern Greece, and some Aegean islands: Samos, Chios and Lesvos. In addition, notes on Pseudorientalia natolica are also given from examination of the type specimens.


Assuntos
Gastrópodes , Masculino , Feminino , Animais , Genitália Feminina , Rios
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